| 1 | N/A, N/A (NA) | N/A, N/A (NA) | 1258 | Search Flights | Route Profile |
| 2 | , Japan (RJBB) | , South Korea (RKSI) | 8 | Search Flights | Route Profile |
| 3 | Hong Kong, Hong Kong (VHHH) | , Japan (RJBB) | 7 | Search Flights | Route Profile |
| 4 | , China (ZSPD) | , Japan (RJBB) | 7 | Search Flights | Route Profile |
| 5 | , Japan (RJBB) | , China (ZSPD) | 5 | Search Flights | Route Profile |
| 6 | , South Korea (RKSI) | , Japan (RJBB) | 5 | Search Flights | Route Profile |
| 7 | Tokyo, Japan (RJTT) | Nagasaki, Japan (RJFU) | 4 | Search Flights | Route Profile |
| 8 | Kumamoto, Japan (RJFT) | Tokyo, Japan (RJTT) | 4 | Search Flights | Route Profile |
| 9 | Tokyo, Japan (RJAA) | Taipei, Taiwan (RCTP) | 4 | Search Flights | Route Profile |
| 10 | Tokyo, Japan (RJTT) | , China (ZSPD) | 4 | Search Flights | Route Profile |
| 11 | , Japan (RJBB) | Seoul, Korea, Republic of (RKSS) | 4 | Search Flights | Route Profile |
| 12 | Tokyo, Japan (RJTT) | Kagoshima, Japan (RJFK) | 3 | Search Flights | Route Profile |
| 13 | Tokyo, Japan (RJTT) | Fukuoka, Japan (RJFF) | 3 | Search Flights | Route Profile |
| 14 | Matsuyama, Japan (RJOM) | Osaka, Japan (RJOO) | 3 | Search Flights | Route Profile |
| 15 | Tokyo, Japan (RJAA) | Fukuoka, Japan (RJFF) | 3 | Search Flights | Route Profile |
| 16 | , China (ZSPD) | Los Angeles, United States (KLAX) | 3 | Search Flights | Route Profile |
| 17 | Tokyo, Japan (RJTT) | Oita, Japan (RJFO) | 3 | Search Flights | Route Profile |
| 18 | , Japan (RJBB) | Taipei, Taiwan (RCTP) | 3 | Search Flights | Route Profile |
| 19 | Tokyo, Japan (RJTT) | Hiroshima, Japan (RJOA) | 3 | Search Flights | Route Profile |
| 20 | Matsuyama, Japan (RJOM) | Tokyo, Japan (RJAA) | 2 | Search Flights | Route Profile |
| 21 | Oita, Japan (RJFO) | Osaka, Japan (RJOO) | 2 | Search Flights | Route Profile |
| 22 | Tokyo, Japan (RJTT) | Okayama, Japan (RJOB) | 2 | Search Flights | Route Profile |
| 23 | Tokyo, Japan (RJAA) | Hong Kong, Hong Kong (VHHH) | 2 | Search Flights | Route Profile |
| 24 | Tokyo, Japan (RJTT) | , Japan (RJFS) | 2 | Search Flights | Route Profile |
| 25 | , Japan (RJBE) | Naha, Japan (ROAH) | 2 | Search Flights | Route Profile |
| 26 | Tokyo, Japan (RJTT) | Miyazaki, Japan (RJFM) | 2 | Search Flights | Route Profile |
| 27 | Guangzhou, China (ZGGG) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 28 | Osaka, Japan (RJOO) | Kumamoto, Japan (RJFT) | 2 | Search Flights | Route Profile |
| 29 | Tokyo, Japan (RJTT) | , Japan (RJBE) | 2 | Search Flights | Route Profile |
| 30 | Beijing, China (ZBAA) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 31 | Yamaguchi, Japan (RJDC) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 32 | , Japan (RJBB) | Hong Kong, Hong Kong (VHHH) | 2 | Search Flights | Route Profile |
| 33 | Tokyo, Japan (RJTT) | Takamatsu, Japan (RJOT) | 2 | Search Flights | Route Profile |
| 34 | Osaka, Japan (RJOO) | Naha, Japan (ROAH) | 2 | Search Flights | Route Profile |
| 35 | Tokyo, Japan (RJTT) | Kumamoto, Japan (RJFT) | 2 | Search Flights | Route Profile |
| 36 | Nagasaki, Japan (RJFU) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 37 | Kochi, Japan (RJOK) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 38 | Hangzhou, China (ZSHC) | Tokyo, Japan (RJAA) | 2 | Search Flights | Route Profile |
| 39 | Tokyo, Japan (RJAA) | Chon Buri, Thailand (VTBS) | 2 | Search Flights | Route Profile |
| 40 | Tokyo, Japan (RJTT) | Shanghai, China (ZSSS) | 2 | Search Flights | Route Profile |
| 41 | Tokyo, Japan (RJAA) | Bangkok, Thailand (VTBD) | 2 | Search Flights | Route Profile |
| 42 | , Japan (RJGG) | , South Korea (RKSI) | 2 | Search Flights | Route Profile |
| 43 | Tokyo, Japan (RJTT) | Yamaguchi, Japan (RJDC) | 2 | Search Flights | Route Profile |
| 44 | , China (ZSPD) | Tokyo, Japan (RJAA) | 2 | Search Flights | Route Profile |
| 45 | Hiroshima, Japan (RJOA) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 46 | Osaka, Japan (RJOO) | Kagoshima, Japan (RJFK) | 2 | Search Flights | Route Profile |
| 47 | Taipei, Taiwan (RCSS) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 48 | , Japan (RJBB) | Kuala Lumpur, Malaysia (WMKK) | 1 | Search Flights | Route Profile |
| 49 | Hong Kong, Hong Kong (VHHH) | Kanazawa, Japan (RJNK) | 1 | Search Flights | Route Profile |
| 50 | Osaka, Japan (RJOO) | Oita, Japan (RJFO) | 1 | Search Flights | Route Profile |
| 51 | Hong Kong, Hong Kong (VHHH) | Boston, United States (KBOS) | 1 | Search Flights | Route Profile |
| 52 | Tokyo, Japan (RJAA) | Kimhae, Korea, Republic of (RKPK) | 1 | Search Flights | Route Profile |
| 53 | , Japan (RJBB) | Hanoi, Viet Nam (VVNB) | 1 | Search Flights | Route Profile |
| 54 | Anchorage, United States (PANC) | Dallas-fort Worth, United States (KDFW) | 1 | Search Flights | Route Profile |
| 55 | , Japan (RJBE) | Kagoshima, Japan (RJFK) | 1 | Search Flights | Route Profile |
| 56 | Qingdao, China (ZSQD) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 57 | Tokyo, Japan (RJAA) | Guangzhou, China (ZGGG) | 1 | Search Flights | Route Profile |
| 58 | , South Korea (RKSI) | Auckland, New Zealand (NZAA) | 1 | Search Flights | Route Profile |
| 59 | Matsumoto, Japan (RJAF) | , Japan (RJBE) | 1 | Search Flights | Route Profile |
| 60 | Tokyo, Japan (RJAA) | Ho Chi Minh City, Viet Nam (VVTS) | 1 | Search Flights | Route Profile |
| 61 | , China (ZSPD) | , Japan (RJGG) | 1 | Search Flights | Route Profile |
| 62 | Singapore, Singapore (WSSS) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 63 | Bombay, India (VABB) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 64 | Osaka, Japan (RJOO) | Matsuyama, Japan (RJOM) | 1 | Search Flights | Route Profile |
| 65 | , Japan (RJBB) | Beijing, China (ZBAA) | 1 | Search Flights | Route Profile |
| 66 | Guangzhou, China (ZGGG) | Los Angeles, United States (KLAX) | 1 | Search Flights | Route Profile |
| 67 | Tokyo, Japan (RJAA) | Zhengzhou, China (ZHCC) | 1 | Search Flights | Route Profile |
| 68 | Beijing, China (ZBAA) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 69 | , Japan (RJGG) | , China (ZSPD) | 1 | Search Flights | Route Profile |
| 70 | Hyakuri, Japan (RJAH) | Fukuoka, Japan (RJFF) | 1 | Search Flights | Route Profile |
| 71 | , Japan (RJBB) | , China (ZSJN) | 1 | Search Flights | Route Profile |
| 72 | , Japan (RJFS) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 73 | New York, United States (KJFK) | Anchorage, United States (PANC) | 1 | Search Flights | Route Profile |
| 74 | Hiroshima, Japan (RJOA) | Sapporo, Japan (RJCC) | 1 | Search Flights | Route Profile |
| 75 | , Japan (RJBE) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 76 | , Japan (RJBB) | Naha, Japan (ROAH) | 1 | Search Flights | Route Profile |
| 77 | Tokyo, Japan (RJAA) | Hanoi, Viet Nam (VVNB) | 1 | Search Flights | Route Profile |
| 78 | Tokyo, Japan (RJTT) | Miho, Japan (RJOH) | 1 | Search Flights | Route Profile |
| 79 | Osaka, Japan (RJOO) | Yakushima, Japan (RJFC) | 1 | Search Flights | Route Profile |
| 80 | , China (ZSJN) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 81 | Singapore, Singapore (WSSS) | Sapporo, Japan (RJCC) | 1 | Search Flights | Route Profile |
| 82 | Wuhan, China (ZHHH) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 83 | Takamatsu, Japan (RJOT) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 84 | , China (ZSPD) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 85 | , Japan (RJBB) | Fukuoka, Japan (RJFF) | 1 | Search Flights | Route Profile |
| 86 | , Japan (RJBB) | Singapore, Singapore (WSSS) | 1 | Search Flights | Route Profile |
| 87 | Tokyo, Japan (RJAA) | , China (ZSPD) | 1 | Search Flights | Route Profile |
| 88 | Tokyo, Japan (RJTT) | Seoul, Korea, Republic of (RKSS) | 1 | Search Flights | Route Profile |
| 89 | Istanbul, Turkey (LTBA) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 90 | Hong Kong, Hong Kong (VHHH) | Toronto, Canada (CYYZ) | 1 | Search Flights | Route Profile |
| 91 | Miyazaki, Japan (RJFM) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 92 | Cheju, South Korea (RKPC) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 93 | , Japan (RJBE) | Sendai, Japan (RJSS) | 1 | Search Flights | Route Profile |
| 94 | Dubai, United Arab Emirates (OMDB) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 95 | , South Korea (RKSI) | Honolulu, United States (PHNL) | 1 | Search Flights | Route Profile |
| 96 | Fuzhou, China (ZSFZ) | New York, United States (KJFK) | 1 | Search Flights | Route Profile |
| 97 | , Japan (RJGG) | Hong Kong, Hong Kong (VHHH) | 1 | Search Flights | Route Profile |
| 98 | , Japan (RJGG) | Kaohsiung, Taiwan (RCKH) | 1 | Search Flights | Route Profile |
| 99 | , Japan (RJBB) | Kaohsiung, Taiwan (RCKH) | 1 | Search Flights | Route Profile |
| 100 | , China (ZSPD) | Detroit, United States (KDTW) | 1 | Search Flights | Route Profile |
| 101 | Hong Kong, Hong Kong (VHHH) | New York, United States (KJFK) | 1 | Search Flights | Route Profile |
| 102 | , Japan (RJBB) | Hangzhou, China (ZSHC) | 1 | Search Flights | Route Profile |
| 103 | Tokyo, Japan (RJAA) | , China (ZJHK) | 1 | Search Flights | Route Profile |
| 104 | Tokyo, Japan (RJTT) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 105 | Hong Kong, Hong Kong (VHHH) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 106 | Kumamoto, Japan (RJFT) | N/A, N/A (NA) | 1 | Search Flights | Route Profile |
| 107 | Los Angeles, United States (KLAX) | , China (ZSPD) | 1 | Search Flights | Route Profile |
| 108 | Tokyo, Japan (RJTT) | Hong Kong, Hong Kong (VHHH) | 1 | Search Flights | Route Profile |
| 109 | Bangkok, Thailand (VTBD) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 110 | Osaka, Japan (RJOO) | Fukuoka, Japan (RJFF) | 1 | Search Flights | Route Profile |
| 111 | Helsinki, Finland (EFHK) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 112 | , Japan (RJNS) | Fukuoka, Japan (RJFF) | 1 | Search Flights | Route Profile |
| 113 | Hyakuri, Japan (RJAH) | Naha, Japan (ROAH) | 1 | Search Flights | Route Profile |
| 114 | Kagoshima, Japan (RJFK) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 115 | Los Angeles, United States (KLAX) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 116 | Kitakyushu, Japan (RJFR) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 117 | Kanazawa, Japan (RJNK) | Hong Kong, Hong Kong (VHHH) | 1 | Search Flights | Route Profile |
| 118 | Takamatsu, Japan (RJOT) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 119 | Hefei, China (ZSOF) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 120 | , Japan (RJBB) | Kimhae, Korea, Republic of (RKPK) | 1 | Search Flights | Route Profile |
| 121 | Dubai, United Arab Emirates (OMDB) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 122 | Taipei, Taiwan (RCTP) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 123 | Hong Kong, Hong Kong (VHHH) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 124 | , Japan (RJBB) | Kagoshima, Japan (RJFK) | 1 | Search Flights | Route Profile |
| 125 | , Thailand (VTCC) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 126 | Cairns, Australia (YBCS) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 127 | Naha, Japan (ROAH) | Sapporo, Japan (RJCC) | 1 | Search Flights | Route Profile |
| 128 | Tokyo, Japan (RJTT) | , South Korea (RKSI) | 1 | Search Flights | Route Profile |
| 129 | Anchorage, United States (PANC) | New York, United States (KJFK) | 1 | Search Flights | Route Profile |
| 130 | Tokyo, Japan (RJAA) | Kaohsiung, Taiwan (RCKH) | 1 | Search Flights | Route Profile |
| 131 | Oita, Japan (RJFO) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 132 | , Japan (RJBB) | Qingdao, China (ZSQD) | 1 | Search Flights | Route Profile |
| 133 | , Japan (RJBB) | Chon Buri, Thailand (VTBS) | 1 | Search Flights | Route Profile |
| 134 | , Japan (RJBB) | Ho Chi Minh City, Viet Nam (VVTS) | 1 | Search Flights | Route Profile |
| 135 | Taipei, Taiwan (RCTP) | , Japan (RJSN) | 1 | Search Flights | Route Profile |
| 136 | Frankfurt, Germany (EDDF) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 137 | Tokyo, Japan (RJAA) | Xiamen, China (ZSAM) | 1 | Search Flights | Route Profile |
| 138 | Tokyo, Japan (RJAA) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 139 | Anchorage, United States (PANC) | Chicago, United States (KORD) | 1 | Search Flights | Route Profile |
| 140 | Tokyo, Japan (RJAA) | Cheju, South Korea (RKPC) | 1 | Search Flights | Route Profile |
| 141 | Sapporo, Japan (RJCC) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 142 | Macau, China (VMMC) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 143 | , Japan (RJBE) | Nagasaki, Japan (RJFU) | 1 | Search Flights | Route Profile |
| 144 | Tokyo, Japan (RJTT) | Izumo, Japan (RJOC) | 1 | Search Flights | Route Profile |
| 145 | London, United Kingdom (EGLL) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 146 | Singapore, Singapore (WSSS) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 147 | Tokyo, Japan (RJAA) | Hangzhou, China (ZSHC) | 1 | Search Flights | Route Profile |
| 148 | Kanazawa, Japan (RJNK) | Naha, Japan (ROAH) | 1 | Search Flights | Route Profile |
| 149 | Mexico City, Mexico (MMMX) | San Francisco, United States (KSFO) | 1 | Search Flights | Route Profile |
