| 1 | N/A, N/A (NA) | N/A, N/A (NA) | 1235 | Search Flights | Route Profile |
| 2 | , Japan (RJBB) | , South Korea (RKSI) | 13 | Search Flights | Route Profile |
| 3 | , China (ZSPD) | , Japan (RJBB) | 11 | Search Flights | Route Profile |
| 4 | , Japan (RJBB) | Hong Kong, Hong Kong (VHHH) | 8 | Search Flights | Route Profile |
| 5 | Tokyo, Japan (RJAA) | Taipei, Taiwan (RCTP) | 7 | Search Flights | Route Profile |
| 6 | Hong Kong, Hong Kong (VHHH) | , Japan (RJBB) | 7 | Search Flights | Route Profile |
| 7 | , South Korea (RKSI) | , Japan (RJBB) | 6 | Search Flights | Route Profile |
| 8 | Kumamoto, Japan (RJFT) | Tokyo, Japan (RJTT) | 5 | Search Flights | Route Profile |
| 9 | , Japan (RJBB) | , China (ZSPD) | 5 | Search Flights | Route Profile |
| 10 | , Japan (RJBB) | Seoul, Korea, Republic of (RKSS) | 5 | Search Flights | Route Profile |
| 11 | Tokyo, Japan (RJTT) | Fukuoka, Japan (RJFF) | 5 | Search Flights | Route Profile |
| 12 | Tokyo, Japan (RJAA) | Hong Kong, Hong Kong (VHHH) | 4 | Search Flights | Route Profile |
| 13 | , China (ZSPD) | Tokyo, Japan (RJAA) | 4 | Search Flights | Route Profile |
| 14 | Tokyo, Japan (RJTT) | , Japan (RJFS) | 4 | Search Flights | Route Profile |
| 15 | Tokyo, Japan (RJTT) | Hiroshima, Japan (RJOA) | 4 | Search Flights | Route Profile |
| 16 | Nagasaki, Japan (RJFU) | Tokyo, Japan (RJTT) | 3 | Search Flights | Route Profile |
| 17 | Tokyo, Japan (RJTT) | Oita, Japan (RJFO) | 3 | Search Flights | Route Profile |
| 18 | Hiroshima, Japan (RJOA) | Tokyo, Japan (RJTT) | 3 | Search Flights | Route Profile |
| 19 | Tokyo, Japan (RJAA) | , China (ZSPD) | 3 | Search Flights | Route Profile |
| 20 | Tokyo, Japan (RJTT) | , China (ZSPD) | 3 | Search Flights | Route Profile |
| 21 | Tokyo, Japan (RJTT) | Okayama, Japan (RJOB) | 3 | Search Flights | Route Profile |
| 22 | , Japan (RJBB) | Taipei, Taiwan (RCTP) | 3 | Search Flights | Route Profile |
| 23 | Tokyo, Japan (RJTT) | Miyazaki, Japan (RJFM) | 3 | Search Flights | Route Profile |
| 24 | Tokyo, Japan (RJTT) | Nagasaki, Japan (RJFU) | 3 | Search Flights | Route Profile |
| 25 | Tokyo, Japan (RJTT) | Takamatsu, Japan (RJOT) | 3 | Search Flights | Route Profile |
| 26 | , Japan (RJBE) | Nagasaki, Japan (RJFU) | 2 | Search Flights | Route Profile |
| 27 | Tokyo, Japan (RJTT) | , Japan (RJBB) | 2 | Search Flights | Route Profile |
| 28 | , Japan (RJBB) | Kimhae, Korea, Republic of (RKPK) | 2 | Search Flights | Route Profile |
| 29 | Tokyo, Japan (RJTT) | Kumamoto, Japan (RJFT) | 2 | Search Flights | Route Profile |
| 30 | Tokyo, Japan (RJAA) | Kaohsiung, Taiwan (RCKH) | 2 | Search Flights | Route Profile |
| 31 | Los Angeles, United States (KLAX) | , China (ZSPD) | 2 | Search Flights | Route Profile |
| 32 | Matsuyama, Japan (RJOM) | Tokyo, Japan (RJAA) | 2 | Search Flights | Route Profile |
| 33 | Osaka, Japan (RJOO) | Kumamoto, Japan (RJFT) | 2 | Search Flights | Route Profile |
| 34 | Hong Kong, Hong Kong (VHHH) | New York, United States (KJFK) | 2 | Search Flights | Route Profile |
| 35 | Guangzhou, China (ZGGG) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 36 | Singapore, Singapore (WSSS) | Taipei, Taiwan (RCTP) | 2 | Search Flights | Route Profile |
| 37 | , Japan (RJBB) | Chon Buri, Thailand (VTBS) | 2 | Search Flights | Route Profile |
| 38 | , Japan (RJBE) | Naha, Japan (ROAH) | 2 | Search Flights | Route Profile |
| 39 | Kumamoto, Japan (RJFT) | N/A, N/A (NA) | 2 | Search Flights | Route Profile |
| 40 | Osaka, Japan (RJOO) | Matsuyama, Japan (RJOM) | 2 | Search Flights | Route Profile |
| 41 | Tokyo, Japan (RJTT) | Shanghai, China (ZSSS) | 2 | Search Flights | Route Profile |
| 42 | , China (ZSPD) | Los Angeles, United States (KLAX) | 2 | Search Flights | Route Profile |
| 43 | Tokyo, Japan (RJAA) | Hanoi, Viet Nam (VVNB) | 2 | Search Flights | Route Profile |
| 44 | Beijing, China (ZBAA) | , Japan (RJBB) | 2 | Search Flights | Route Profile |
| 45 | Beijing, China (ZBAA) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 46 | Singapore, Singapore (WSSS) | , Japan (RJBB) | 2 | Search Flights | Route Profile |
| 47 | Tokyo, Japan (RJAA) | , South Korea (RKSI) | 2 | Search Flights | Route Profile |
| 48 | , Japan (RJBB) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 49 | Hanoi, Viet Nam (VVNB) | Tokyo, Japan (RJAA) | 2 | Search Flights | Route Profile |
| 50 | Tokyo, Japan (RJTT) | Kagoshima, Japan (RJFK) | 2 | Search Flights | Route Profile |
| 51 | Takamatsu, Japan (RJOT) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 52 | Osaka, Japan (RJOO) | Naha, Japan (ROAH) | 2 | Search Flights | Route Profile |
| 53 | Tokyo, Japan (RJAA) | Fukuoka, Japan (RJFF) | 2 | Search Flights | Route Profile |
| 54 | Anchorage, United States (PANC) | Chicago, United States (KORD) | 2 | Search Flights | Route Profile |
| 55 | , Japan (RJBB) | Ho Chi Minh City, Viet Nam (VVTS) | 1 | Search Flights | Route Profile |
| 56 | Tokyo, Japan (RJAA) | Hangzhou, China (ZSHC) | 1 | Search Flights | Route Profile |
| 57 | Kumamoto, Japan (RJFT) | Osaka, Japan (RJOO) | 1 | Search Flights | Route Profile |
| 58 | , Japan (RJBB) | Masbate, Philippines (RPVM) | 1 | Search Flights | Route Profile |
| 59 | , Japan (RJOW) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 60 | Hong Kong, Hong Kong (VHHH) | Kanazawa, Japan (RJNK) | 1 | Search Flights | Route Profile |
| 61 | Wurxi, China (ZSWX) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 62 | , Japan (RJFS) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 63 | Tokyo, Japan (RJTT) | Istanbul, Turkey (LTBA) | 1 | Search Flights | Route Profile |
| 64 | , Japan (RJBE) | Hyakuri, Japan (RJAH) | 1 | Search Flights | Route Profile |
| 65 | , Japan (RJGG) | , China (ZSPD) | 1 | Search Flights | Route Profile |
| 66 | Hiroshima, Japan (RJOA) | Sapporo, Japan (RJCC) | 1 | Search Flights | Route Profile |
| 67 | Dubai, United Arab Emirates (OMDB) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 68 | Kitakyushu, Japan (RJFR) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 69 | Tokyo, Japan (RJTT) | Delhi, India (VIDP) | 1 | Search Flights | Route Profile |
| 70 | Colombo, Sri Lanka (VCBI) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 71 | , China (ZSPD) | Detroit, United States (KDTW) | 1 | Search Flights | Route Profile |
| 72 | , Japan (RJBB) | Cheju, South Korea (RKPC) | 1 | Search Flights | Route Profile |
| 73 | , Japan (RJBB) | N/A, N/A (NA) | 1 | Search Flights | Route Profile |
| 74 | Tokyo, Japan (RJAA) | Xiamen, China (ZSAM) | 1 | Search Flights | Route Profile |
| 75 | , Japan (RJBB) | Hangzhou, China (ZSHC) | 1 | Search Flights | Route Profile |
| 76 | Wuhan, China (ZHHH) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 77 | Taipei, Taiwan (RCTP) | Hanamaki, Japan (RJSI) | 1 | Search Flights | Route Profile |
| 78 | , Japan (RJGG) | Beijing, China (ZBAA) | 1 | Search Flights | Route Profile |
| 79 | Tokyo, Japan (RJAA) | Ninbo, China (ZSNB) | 1 | Search Flights | Route Profile |
| 80 | , Japan (RJBB) | Taegu, Korea, Republic of (RKTN) | 1 | Search Flights | Route Profile |
| 81 | , Japan (RJNS) | Fukuoka, Japan (RJFF) | 1 | Search Flights | Route Profile |
| 82 | Osaka, Japan (RJOO) | Yakushima, Japan (RJFC) | 1 | Search Flights | Route Profile |
| 83 | Chon Buri, Thailand (VTBS) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 84 | Hong Kong, Hong Kong (VHHH) | Boston, United States (KBOS) | 1 | Search Flights | Route Profile |
| 85 | Yamaguchi, Japan (RJDC) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 86 | Osaka, Japan (RJOO) | Oita, Japan (RJFO) | 1 | Search Flights | Route Profile |
| 87 | London, United Kingdom (EGLL) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 88 | Dallas-fort Worth, United States (KDFW) | Los Angeles, United States (KLAX) | 1 | Search Flights | Route Profile |
| 89 | Taipei, Taiwan (RCTP) | Aomori, Japan (RJSA) | 1 | Search Flights | Route Profile |
| 90 | Masbate, Philippines (RPVM) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 91 | , Japan (RJBB) | , China (ZSYW) | 1 | Search Flights | Route Profile |
| 92 | Bombay, India (VABB) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 93 | , Japan (RJGG) | Kaohsiung, Taiwan (RCKH) | 1 | Search Flights | Route Profile |
| 94 | Helsinki, Finland (EFHK) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 95 | Tokyo, Japan (RJAA) | Guangzhou, China (ZGGG) | 1 | Search Flights | Route Profile |
| 96 | , China (ZSJN) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 97 | , Japan (RJBB) | Kaohsiung, Taiwan (RCKH) | 1 | Search Flights | Route Profile |
| 98 | Shenzhen, China (ZGSZ) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 99 | Hangzhou, China (ZSHC) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 100 | Sendai, Japan (RJSS) | , China (ZSPD) | 1 | Search Flights | Route Profile |
| 101 | Kimhae, Korea, Republic of (RKPK) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 102 | Oita, Japan (RJFO) | Osaka, Japan (RJOO) | 1 | Search Flights | Route Profile |
| 103 | , China (ZSPD) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 104 | Taegu, Korea, Republic of (RKTN) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 105 | , Japan (RJBB) | Chongqing, China (ZUCK) | 1 | Search Flights | Route Profile |
| 106 | Hong Kong, Hong Kong (VHHH) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 107 | Tokyo, Japan (RJTT) | Taipei, Taiwan (RCSS) | 1 | Search Flights | Route Profile |
| 108 | , Japan (RJBB) | Helsinki, Finland (EFHK) | 1 | Search Flights | Route Profile |
| 109 | Shenzhen, China (ZGSZ) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 110 | Doha, Qatar (OTBD) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 111 | Osaka, Japan (RJOO) | Nagasaki, Japan (RJFU) | 1 | Search Flights | Route Profile |
| 112 | Kagoshima, Japan (RJFK) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 113 | , Japan (RJBB) | , China (ZSJN) | 1 | Search Flights | Route Profile |
| 114 | Oita, Japan (RJFO) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 115 | , Japan (RJGG) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 116 | Hong Kong, Hong Kong (VHHH) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 117 | Naha, Japan (ROAH) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 118 | Dubai, United Arab Emirates (OMDB) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 119 | Mexico City, Mexico (MMMX) | San Francisco, United States (KSFO) | 1 | Search Flights | Route Profile |
| 120 | Tokyo, Japan (RJTT) | Yamaguchi, Japan (RJDC) | 1 | Search Flights | Route Profile |
| 121 | Macau, China (VMMC) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 122 | , China (ZSPD) | San Francisco, United States (KSFO) | 1 | Search Flights | Route Profile |
| 123 | N/A, N/A (NA) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 124 | Honolulu, United States (PHNL) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 125 | , Japan (RJBB) | Singapore, Singapore (WSSS) | 1 | Search Flights | Route Profile |
| 126 | Tokushima, Japan (RJOS) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 127 | Lanzhou, China (ZLLL) | , China (ZSPD) | 1 | Search Flights | Route Profile |
| 128 | Bangkok, Thailand (VTBD) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 129 | , Japan (RJBB) | Beijing, China (ZBAA) | 1 | Search Flights | Route Profile |
| 130 | , Japan (RJBB) | Kuala Lumpur, Malaysia (WMKK) | 1 | Search Flights | Route Profile |
| 131 | Matsuyama, Japan (RJOM) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 132 | Shanghai, China (ZSSS) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 133 | , Japan (RJBE) | Sapporo, Japan (RJCC) | 1 | Search Flights | Route Profile |
| 134 | Sendai, Japan (RJSS) | , Japan (RJBE) | 1 | Search Flights | Route Profile |
| 135 | Tokyo, Japan (RJAA) | Macau, China (VMMC) | 1 | Search Flights | Route Profile |
| 136 | Hong Kong, Hong Kong (VHHH) | Toronto, Canada (CYYZ) | 1 | Search Flights | Route Profile |
| 137 | , Japan (RJBB) | Shenzhen, China (ZGSZ) | 1 | Search Flights | Route Profile |
| 138 | , Japan (RJBB) | Naha, Japan (ROAH) | 1 | Search Flights | Route Profile |
| 139 | Kagoshima, Japan (RJFK) | , Japan (RJGG) | 1 | Search Flights | Route Profile |
| 140 | , Japan (RJBE) | Shimojishima, Japan (RORS) | 1 | Search Flights | Route Profile |
| 141 | Kochi, Japan (RJOK) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 142 | , Japan (RJBB) | Nanjing, China (ZSNJ) | 1 | Search Flights | Route Profile |
| 143 | Matsuyama, Japan (RJOM) | Osaka, Japan (RJOO) | 1 | Search Flights | Route Profile |
| 144 | Kumamoto, Japan (RJFT) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 145 | Tokyo, Japan (RJTT) | Shenzhen, China (ZGSZ) | 1 | Search Flights | Route Profile |
| 146 | Manila, Philippines (RPLL) | Sapporo, Japan (RJCC) | 1 | Search Flights | Route Profile |
| 147 | , Japan (RJBB) | Kagoshima, Japan (RJFK) | 1 | Search Flights | Route Profile |
| 148 | Takamatsu, Japan (RJOT) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 149 | Kanazawa, Japan (RJNK) | Naha, Japan (ROAH) | 1 | Search Flights | Route Profile |
| 150 | , Japan (RJBB) | Fukuoka, Japan (RJFF) | 1 | Search Flights | Route Profile |
| 151 | Hong Kong, Hong Kong (VHHH) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 152 | , Japan (RJGG) | , South Korea (RKSI) | 1 | Search Flights | Route Profile |
| 153 | Los Angeles, United States (KLAX) | Shenzhen, China (ZGSZ) | 1 | Search Flights | Route Profile |
| 154 | Hangzhou, China (ZSHC) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 155 | Bangkok, Thailand (VTBD) | Sapporo, Japan (RJCC) | 1 | Search Flights | Route Profile |
| 156 | Los Angeles, United States (KLAX) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 157 | Hyakuri, Japan (RJAH) | Fukuoka, Japan (RJFF) | 1 | Search Flights | Route Profile |
| 158 | , Japan (RJBB) | Qingdao, China (ZSQD) | 1 | Search Flights | Route Profile |
| 159 | Tokyo, Japan (RJTT) | Iwakuni, Japan (RJOI) | 1 | Search Flights | Route Profile |
| 160 | Tokyo, Japan (RJTT) | Beijing, China (ZBAA) | 1 | Search Flights | Route Profile |
| 161 | , South Korea (RKSI) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 162 | , China (ZSPD) | , Japan (RJGG) | 1 | Search Flights | Route Profile |
| 163 | Taipei, Taiwan (RCTP) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 164 | Tokyo, Japan (RJTT) | Hong Kong, Hong Kong (VHHH) | 1 | Search Flights | Route Profile |
| 165 | , Japan (RJBB) | , China (ZSYN) | 1 | Search Flights | Route Profile |
| 166 | Singapore, Singapore (WSSS) | Sapporo, Japan (RJCC) | 1 | Search Flights | Route Profile |
| 167 | Miyazaki, Japan (RJFM) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 168 | , Japan (RJBB) | Hanoi, Viet Nam (VVNB) | 1 | Search Flights | Route Profile |
| 169 | Qingdao, China (ZSQD) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 170 | Guangzhou, China (ZGGG) | Los Angeles, United States (KLAX) | 1 | Search Flights | Route Profile |
| 171 | , Japan (RJBE) | Kagoshima, Japan (RJFK) | 1 | Search Flights | Route Profile |
| 172 | Okayama, Japan (RJOB) | Sapporo, Japan (RJCC) | 1 | Search Flights | Route Profile |
| 173 | Tokyo, Japan (RJAA) | Wuhan, China (ZHHH) | 1 | Search Flights | Route Profile |
| 174 | Nanjing, China (ZSNJ) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 175 | Tokyo, Japan (RJAA) | Kimhae, Korea, Republic of (RKPK) | 1 | Search Flights | Route Profile |
| 176 | Chicago, United States (KORD) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 177 | Tokyo, Japan (RJAA) | Matsuyama, Japan (RJOM) | 1 | Search Flights | Route Profile |
